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densitree 0.1.0 documentation

  • GitHub
  • PyPI
  • GitHub
  • PyPI

Getting Started

  • Installation
  • Quick Start

User Guide

  • densitree User Guide

Tutorials

  • Tutorial: Flow Cytometry Analysis with densitree
  • Tutorial: Comparing Conditions

API Reference

  • SPADE
  • SPADEResult
  • Pipeline Steps
  • Plotting

Benchmarks

  • Benchmarks Overview
  • Benchmark Datasets
  • Benchmark Results
  • Method Comparison

Method

  • The SPADE Algorithm
  • Improvements over Standard SPADE
  • References
  • Overview: module code

All modules for which code is available

  • densitree.plot.matplotlib
  • densitree.plot.plotly
  • densitree.result
  • densitree.spade
  • densitree.steps.base
  • densitree.steps.cluster
  • densitree.steps.density
  • densitree.steps.downsample
  • densitree.steps.mst
  • densitree.steps.upsample
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